1071d4279SBram Moolenaar" Vim syntax file 2071d4279SBram Moolenaar" Language: AceDB model files 3071d4279SBram Moolenaar" Maintainer: Stewart Morris ([email protected]) 4071d4279SBram Moolenaar" Last change: Thu Apr 26 10:38:01 BST 2001 5071d4279SBram Moolenaar" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim 6071d4279SBram Moolenaar 7071d4279SBram Moolenaar" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm 8071d4279SBram Moolenaar" AceDB software is available from http://www.acedb.org 9071d4279SBram Moolenaar 1089bcfda6SBram Moolenaar" quit when a syntax file was already loaded 1189bcfda6SBram Moolenaarif exists("b:current_syntax") 12071d4279SBram Moolenaar finish 13071d4279SBram Moolenaarendif 14071d4279SBram Moolenaar 15071d4279SBram Moolenaarsyn keyword acedbXref XREF 16071d4279SBram Moolenaarsyn keyword acedbModifier UNIQUE REPEAT 17071d4279SBram Moolenaar 18071d4279SBram Moolenaarsyn case ignore 19071d4279SBram Moolenaarsyn keyword acedbModifier Constraints 20071d4279SBram Moolenaarsyn keyword acedbType DateType Int Text Float 21071d4279SBram Moolenaar 22071d4279SBram Moolenaar" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html 23071d4279SBram Moolenaarsyn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title 24071d4279SBram Moolenaarsyn keyword acedbMagic Flipped Centre Extent View Default_view 25071d4279SBram Moolenaarsyn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes 26071d4279SBram Moolenaarsyn keyword acedbMagic Mapping_data More_data Position Ends Left Right 27071d4279SBram Moolenaarsyn keyword acedbMagic Multi_Position Multi_Ends With Error Relative 28071d4279SBram Moolenaarsyn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge 29071d4279SBram Moolenaarsyn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag 30071d4279SBram Moolenaarsyn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit 31071d4279SBram Moolenaarsyn keyword acedbMagic Locator Magnification Projection_lines_on 32071d4279SBram Moolenaarsyn keyword acedbMagic Marker_points Marker_intervals Contigs 33071d4279SBram Moolenaarsyn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood 34071d4279SBram Moolenaarsyn keyword acedbMagic Point_query Point_yellow Point_width 35071d4279SBram Moolenaarsyn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne 36071d4279SBram Moolenaarsyn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates 37071d4279SBram Moolenaarsyn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all 38071d4279SBram Moolenaarsyn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap 39071d4279SBram Moolenaarsyn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid 40071d4279SBram Moolenaarsyn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling 41071d4279SBram Moolenaarsyn keyword acedbMagic DNA Structure From Source Source_Exons 42071d4279SBram Moolenaarsyn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele 43071d4279SBram Moolenaarsyn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive 44071d4279SBram Moolenaarsyn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol 45071d4279SBram Moolenaarsyn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title 46071d4279SBram Moolenaarsyn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant 47071d4279SBram Moolenaarsyn keyword acedbMagic Tested Selected_trans Backcross Back_one 48071d4279SBram Moolenaarsyn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc 49071d4279SBram Moolenaarsyn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B 50071d4279SBram Moolenaarsyn keyword acedbMagic Score Score_by_offset Score_by_width 51071d4279SBram Moolenaarsyn keyword acedbMagic Right_priority Blastn Blixem Blixem_X 52071d4279SBram Moolenaarsyn keyword acedbMagic Journal Year Volume Page Author 53071d4279SBram Moolenaarsyn keyword acedbMagic Selected One_all Recs_all One_let 54071d4279SBram Moolenaarsyn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected 55071d4279SBram Moolenaarsyn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid 56071d4279SBram Moolenaarsyn keyword acedbMagic Reversed_physical Points Positive Negative 57071d4279SBram Moolenaarsyn keyword acedbMagic Point_error_scale Point_segregate_ordered 58071d4279SBram Moolenaarsyn keyword acedbMagic Point_symbol Interval_JTM Interval_RD 59071d4279SBram Moolenaarsyn keyword acedbMagic EMBL_feature Homol Feature 60071d4279SBram Moolenaarsyn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width 61071d4279SBram Moolenaarsyn keyword acedbMagic RH_positive RH_negative RH_contradictory Query 62071d4279SBram Moolenaarsyn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to 63071d4279SBram Moolenaarsyn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A 64071d4279SBram Moolenaarsyn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence 65071d4279SBram Moolenaarsyn keyword acedbMagic Visible Properties Transposon 66071d4279SBram Moolenaar 67071d4279SBram Moolenaarsyn match acedbClass "^?\w\+\|^#\w\+" 68071d4279SBram Moolenaarsyn match acedbComment "//.*" 69071d4279SBram Moolenaarsyn region acedbComment start="/\*" end="\*/" 70071d4279SBram Moolenaarsyn match acedbComment "^#\W.*" 71071d4279SBram Moolenaarsyn match acedbHelp "^\*\*\w\+$" 72071d4279SBram Moolenaarsyn match acedbTag "[^^]?\w\+\|[^^]#\w\+" 73071d4279SBram Moolenaarsyn match acedbBlock "//#.\+#$" 74071d4279SBram Moolenaarsyn match acedbOption "^_[DVH]\S\+" 75071d4279SBram Moolenaarsyn match acedbFlag "\s\+-\h\+" 76071d4279SBram Moolenaarsyn match acedbSubclass "^Class" 77071d4279SBram Moolenaarsyn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" 78071d4279SBram Moolenaarsyn match acedbNumber "\<\d\+\>" 79071d4279SBram Moolenaarsyn match acedbNumber "\<\d\+\.\d\+\>" 80071d4279SBram Moolenaarsyn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" 81071d4279SBram Moolenaarsyn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline 82071d4279SBram Moolenaar 83071d4279SBram Moolenaar" Rest of syntax highlighting rules start here 84071d4279SBram Moolenaar 85071d4279SBram Moolenaar" Define the default highlighting. 8689bcfda6SBram Moolenaar" Only when an item doesn't have highlighting yet 87071d4279SBram Moolenaar 88*f37506f6SBram Moolenaarhi def link acedbMagic Special 89*f37506f6SBram Moolenaarhi def link acedbHyb Special 90*f37506f6SBram Moolenaarhi def link acedbType Type 91*f37506f6SBram Moolenaarhi def link acedbOption Type 92*f37506f6SBram Moolenaarhi def link acedbSubclass Type 93*f37506f6SBram Moolenaarhi def link acedbSubtag Include 94*f37506f6SBram Moolenaarhi def link acedbFlag Include 95*f37506f6SBram Moolenaarhi def link acedbTag Include 96*f37506f6SBram Moolenaarhi def link acedbClass Todo 97*f37506f6SBram Moolenaarhi def link acedbHelp Todo 98*f37506f6SBram Moolenaarhi def link acedbXref Identifier 99*f37506f6SBram Moolenaarhi def link acedbModifier Label 100*f37506f6SBram Moolenaarhi def link acedbComment Comment 101*f37506f6SBram Moolenaarhi def link acedbBlock ModeMsg 102*f37506f6SBram Moolenaarhi def link acedbNumber Number 103*f37506f6SBram Moolenaarhi def link acedbString String 104071d4279SBram Moolenaar 105071d4279SBram Moolenaar 106071d4279SBram Moolenaarlet b:current_syntax = "acedb" 107071d4279SBram Moolenaar 108071d4279SBram Moolenaar" The structure of the model.wrm file is sensitive to mixed tab and space 109071d4279SBram Moolenaar" indentation and assumes tabs are 8 so... 110071d4279SBram Moolenaarse ts=8 111