1" Vim syntax file 2" Language: AceDB model files 3" Maintainer: Stewart Morris ([email protected]) 4" Last change: Thu Apr 26 10:38:01 BST 2001 5" URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim 6 7" Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm 8" AceDB software is available from http://www.acedb.org 9 10" quit when a syntax file was already loaded 11if exists("b:current_syntax") 12 finish 13endif 14 15syn keyword acedbXref XREF 16syn keyword acedbModifier UNIQUE REPEAT 17 18syn case ignore 19syn keyword acedbModifier Constraints 20syn keyword acedbType DateType Int Text Float 21 22" Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html 23syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title 24syn keyword acedbMagic Flipped Centre Extent View Default_view 25syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes 26syn keyword acedbMagic Mapping_data More_data Position Ends Left Right 27syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative 28syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge 29syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag 30syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit 31syn keyword acedbMagic Locator Magnification Projection_lines_on 32syn keyword acedbMagic Marker_points Marker_intervals Contigs 33syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood 34syn keyword acedbMagic Point_query Point_yellow Point_width 35syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne 36syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates 37syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all 38syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap 39syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid 40syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling 41syn keyword acedbMagic DNA Structure From Source Source_Exons 42syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele 43syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive 44syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol 45syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title 46syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant 47syn keyword acedbMagic Tested Selected_trans Backcross Back_one 48syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc 49syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B 50syn keyword acedbMagic Score Score_by_offset Score_by_width 51syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X 52syn keyword acedbMagic Journal Year Volume Page Author 53syn keyword acedbMagic Selected One_all Recs_all One_let 54syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected 55syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid 56syn keyword acedbMagic Reversed_physical Points Positive Negative 57syn keyword acedbMagic Point_error_scale Point_segregate_ordered 58syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD 59syn keyword acedbMagic EMBL_feature Homol Feature 60syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width 61syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query 62syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to 63syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A 64syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence 65syn keyword acedbMagic Visible Properties Transposon 66 67syn match acedbClass "^?\w\+\|^#\w\+" 68syn match acedbComment "//.*" 69syn region acedbComment start="/\*" end="\*/" 70syn match acedbComment "^#\W.*" 71syn match acedbHelp "^\*\*\w\+$" 72syn match acedbTag "[^^]?\w\+\|[^^]#\w\+" 73syn match acedbBlock "//#.\+#$" 74syn match acedbOption "^_[DVH]\S\+" 75syn match acedbFlag "\s\+-\h\+" 76syn match acedbSubclass "^Class" 77syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" 78syn match acedbNumber "\<\d\+\>" 79syn match acedbNumber "\<\d\+\.\d\+\>" 80syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" 81syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline 82 83" Rest of syntax highlighting rules start here 84 85" Define the default highlighting. 86" Only when an item doesn't have highlighting yet 87 88hi def link acedbMagic Special 89hi def link acedbHyb Special 90hi def link acedbType Type 91hi def link acedbOption Type 92hi def link acedbSubclass Type 93hi def link acedbSubtag Include 94hi def link acedbFlag Include 95hi def link acedbTag Include 96hi def link acedbClass Todo 97hi def link acedbHelp Todo 98hi def link acedbXref Identifier 99hi def link acedbModifier Label 100hi def link acedbComment Comment 101hi def link acedbBlock ModeMsg 102hi def link acedbNumber Number 103hi def link acedbString String 104 105 106let b:current_syntax = "acedb" 107 108" The structure of the model.wrm file is sensitive to mixed tab and space 109" indentation and assumes tabs are 8 so... 110se ts=8 111